毕长伟，男，人工智能系教师，博士毕业于东南大学。长期从事生物信息学和基因组学研究，近五年以第一作者或通讯作者（含共同）在Horticulture Research、Nature Communications、Plant Diversity、BMC Plant Biology、Frontiers in Plant Science、Ecology and Evolution等高水平期刊发表学术论文十余篇，其中两篇论文为高被引论文。此外，获得国家发明专利2项，软件著作权3项，并担任Frontiers in Plant Science、BMC Genomics和Frontiers in Genetics等期刊编辑。指导本科生获得江苏省大学生创新项目、“蓝桥杯”省级一等奖及国家级二等奖等多项竞赛奖项，获得蓝桥杯优秀指导教师称号。

1. Bi C, Shen F, Han F, Qu Y, Hou J, Xu K, Xu L, He W, Wu Z*, Yin T*. PMAT: an efficient plant mitogenome assembly toolkit using ultra-low coverage HiFi sequencing data. Horticulture Research, 2024a, 11: uhae023. 

2. Bi C, Sun N, Han F, Xu K, Yang Y*, Ferguson D. The first mitogenome of Lauraceae (Cinnamomum chekiangense). Plant Diversity, 2024b, 46: 144-148. 

3. Wang Y, Cui G, He K, Xu K, Liu W, Wang Y, Wang Z, Liu S, Bi C*. Assembly and Comparative Analysis of the Complete Mitochondrial Genome of Ilex rotunda Thunb. Forests. 2024; 15(7):1117. (本科生一作)

4. Sun N, Han F, Wang S, Shen F, Liu W, Fan W*, Bi C*. Comprehensive analysis of the Lycopodium japonicum mitogenome reveals abundant tRNA genes and cis-spliced introns in Lycopodiaceae species. Frontiers in Plant Science, 2024, 15: 1446015. (本科生一作)

5. Shen F^#, Xu S^#, Shen Q^#, Bi C^#, Lysak M*. The allotetraploid horseradish genome provides insights into subgenome diversification and formation of critical traits. Nature Communications, 2023, 14: 4102. 

6. Bi C, Qu Y, Hou J, Wu K, Ye N, Yin T*. Deciphering the multi-chromosomal mitochondrial genome of Populus simonii. Frontiers in Plant Science, 2022, 13: 914635. 高被引论文.

7. Bi C, Lu N, Xu Y, He C*, Lu Z*. Characterization, and analysis of the mitochondrial genome of common bean (Phaseolus vulgaris) by comparative genomic approaches. International Journal of Molecular Sciences, 2020, 21: 3778. 

8. Bi C, Lu N, Huang Z, Chen J, He C*, Lu Z*. Whole-genome resequencing reveals the pleistocene temporal dynamics of Branchiostoma belcheri and Branchiostoma floridae populations. Ecology and Evolution, 2020, 10: 8210-8224. 

9. Qu Y, Zhou P, Tong C, Bi C*, Xu L*. Assembly and analysis of the Populus deltoides mitochondrial genome: the first report of a multi-circular mitochondrial conformation for the genus Populus. Journal of Forestry Research, 2023, 34: 717–733. 

10. Wang Y, Sun N, Shi W, Ma Q, Sun L, Hao M, Bi C*, Li S*. Assembly and comparative analysis of the complete mitochondrial genome of Ilex macrocarpa. Forests, 2023, 14: 2372. 

11. Han F, Qu Y, Chen Y, Xu L, Bi C*. Assembly and comparative analysis of the complete mitochondrial genome of Salix wilsonii using PacBio HiFi sequencing. Frontiers in Plant Science, 2022, 13: 1031769. 

12. Ma Q, Wang Y, Li S, Wen J, Zhu L, Yan K, Du Y, Ren J, Li S, Chen Z, Bi C*, Li Q*. Assembly and comparative analysis of the first complete mitochondrial genome of Acer truncatum Bunge: a woody oil-tree species producing nervonic acid. BMC Plant Biology, 2022, 22: 29. 高被引论文.

13. Bi C, Lu N, Han T, Huang Z, Chen JY, He C*, Lu Z*. Whole-Genome Resequencing of Twenty Branchiostoma belcheri Individuals Provides a Brand-New Variant Dataset for Branchiostoma. Biomed Res Int. 2020 Jan 24;2020:3697342.

14. Bi C, Xu Y, Ye Q, Yin T, Ye N*. Genome-wide identification and characterization of WRKY gene family in Salix suchowensis. PeerJ. 2016 Sep 7;4:e2437. 

15. Bi C, Paterson AH, Wang X, Xu Y, Wu D, Qu Y, Jiang A, Ye Q, Ye N*. Analysis of the Complete Mitochondrial Genome Sequence of the Diploid Cotton Gossypium raimondii by Comparative Genomics Approaches. Biomed Res Int. 2016;2016:5040598. 

16. Xu Y, Bi C, Wu G, Wei S, Dai X, Yin T, Ye N*. VGSC: A Web-Based Vector Graph Toolkit of Genome Synteny and Collinearity. Biomed Res Int. 2016;2016:7823429. 

17. Lu N, Qiao Y, An P, Luo J, Bi C, Li M, Lu Z*, Tu J*. Exploration of whole genome amplification generated chimeric sequences in long-read sequencing data. Brief Bioinform. 2023 Sep 20;24(5):bbad275. 

18. Huang Z, Xu L, Cai C, Zhou Y, Liu J, Xu Z, Zhu Z, Kang W, Cen W, Pei S, Chen D, Shi C, Wu X, Huang Y, Xu C, Yan Y, Yang Y, Xue T, He W, Hu X, Zhang Y, Chen Y, Bi C, He C, Xue L, Xiao S, Yue Z, Jiang Y, Yu JK, Jarvis ED, Li G, Lin G, Zhang Q*, Zhou Q*. Three amphioxus reference genomes reveal gene and chromosome evolution of chordates. Proc Natl Acad Sci U S A. 2023 Mar 7;120(10):e2201504120.  

19. Lu N, Li J, Bi C, Guo J, Tao Y, Luan K, Tu J*, Lu Z*. ChimeraMiner: An Improved Chimeric Read Detection Pipeline and Its Application in Single Cell Sequencing. Int J Mol Sci. 2019 Apr 21;20(8):1953.  

20. Wang X, Cheng F, Rohlsen D, Bi C, Wang C, Xu Y, Wei S, Ye Q, Yin T, Ye N*. Organellar genome assembly methods and comparative analysis of horticultural plants. Hortic Res. 2018 Jan 10;5:3.  

21. He C, Han T, Liao X, Zhou Y, Wang X, Guan R, Tian T, Li Y, Bi C, Lu N, He Z, Hu B, Zhou Q, Hu Y, Lu Z*, Chen JY*. Phagocytic intracellular digestion in amphioxus (Branchiostoma). Proc Biol Sci. 2018 Jun 13;285(1880):20180438.  

22. Ye N*, Wang X, Li J, Bi C, Xu Y, Wu D, Ye Q. Assembly and comparative analysis of complete mitochondrial genome sequence of an economic plant Salix suchowensis. PeerJ. 2017 Mar 29;5:e3148.  

1. 江苏省自然科学基金，青年项目，2022-07至2025-06，在研，主持

2. 江苏省高校自然科学基金，面上项目，2022-07至2024-06，在研，主持

3. 江苏省“双创博士”，2022-07至2024-06，在研，主持

Python编程、林业遥感信息处理、计算机基础