毕长伟，男，人工智能系教师，工学博士，毕业于东南大学。主持江苏省自然科学基金青年项目和江苏省高校自然科学基金面上项目，江苏省“双创博士”。长期从事生物信息学、基因组学及植物表型组学研究，已发表学术论文50余篇，其中近五年以第一作者或通讯作者（含共同）在Nature Communications、Horticulture Research、Plant Diversity、BMC Plant Biology、Plant Cell Reports、Frontiers in Plant Science、Ecology and Evolution等期刊发表论文十余篇，其中三篇ESI高被引论文，两篇ESI热点论文，授权国家发明专利2项，软件著作权5项。担任Horticulture Research、Genomics Communications青年编委，并担任Frontiers in Plant Science、BMC Genomics和Frontiers in Genetics等期刊handle editor。指导本科生发表多篇高水平SCI论文以及“蓝桥杯”国家级二等奖等多项竞赛奖项，获得蓝桥杯优秀指导教师称号。

第一与通讯作者论文：

Bi C, Shen F, Han F, Qu Y, Hou J, Xu K, Xu L, He W, Wu Z*, Yin T*. PMAT: an efficient plant mitogenome assembly toolkit using ultra-low coverage HiFi sequencing data. Horticulture Research, 2024a, 11: uhae023. （ESI高被引论文，热点论文）

Bi C, Sun N, Han F, Xu K, Yang Y*, Ferguson D. The first mitogenome of Lauraceae (Cinnamomum chekiangense). Plant Diversity, 2024b, 46: 144-148. 

Bi C, Qu Y, Hou J, Wu K, Ye N, Yin T*. Deciphering the multi-chromosomal mitochondrial genome of Populus simonii. Frontiers in Plant Science, 2022, 13: 914635. （ESI高被引论文）

Bi C, Lu N, Xu Y, He C*, Lu Z*. Characterization, and analysis of the mitochondrial genome of common bean (Phaseolus vulgaris) by comparative genomic approaches. International Journal of Molecular Sciences, 2020, 21: 3778. （引用次数100+）

Bi C, Lu N, Huang Z, Chen J, He C*, Lu Z*. Whole-genome resequencing reveals the pleistocene temporal dynamics of Branchiostoma belcheri and Branchiostoma floridae populations. Ecology and Evolution, 2020, 10: 8210-8224. 

Bi C, Lu N, Han T, Huang Z, Chen JY, He C*, Lu Z*. Whole-Genome Resequencing of Twenty Branchiostoma belcheri Individuals Provides a Brand-New Variant Dataset for Branchiostoma. Biomed Res Int. 2020 Jan 24;2020:3697342.

Bi C, Xu Y, Ye Q, Yin T, Ye N*. Genome-wide identification and characterization of WRKY gene family in Salix suchowensis. PeerJ. 2016 Sep 7;4:e2437. 

Bi C, Paterson AH, Wang X, Xu Y, Wu D, Qu Y, Jiang A, Ye Q, Ye N*. Analysis of the Complete Mitochondrial Genome Sequence of the Diploid Cotton Gossypium raimondii by Comparative Genomics Approaches. Biomed Res Int. 2016;2016:5040598. 

Bi C, Wang X, et al., The complete mitochondrial genome of Medicago truncatula. Mitochondrial DNA Part B-Resources. 2016.

Wang S, Qiu J, Sun N, Han F, Wang Z, Yang Y^*, Bi C*. Characterization and comparative analysis of the first mitogenome of Michelia (Magnoliaceae), Genomics Communications, 2025.（本科生一作）

Wang Y, Cui G, He K, Xu K, Liu W, Wang Y, Wang Z, Liu S, Bi C*. Assembly and Comparative Analysis of the Complete Mitochondrial Genome of Ilex rotunda Thunb. Forests. 2024; 15(7):1117. (本科生一作)

Sun N, Han F, Wang S, Shen F, Liu W, Fan W*, Bi C*. Comprehensive analysis of the Lycopodium japonicum mitogenome reveals abundant tRNA genes and cis-spliced introns in Lycopodiaceae species. Frontiers in Plant Science, 2024, 15: 1446015. (本科生一作)

Han F^#, Bi C^#, et al., Unraveling the complex evolutionary features of the Cinnamomum camphora mitochondrial genome. Plant Cell Reports, 2024.

Shen F^#, Xu S^#, Shen Q^#, Bi C^#, Lysak M*. The allotetraploid horseradish genome provides insights into subgenome diversification and formation of critical traits. Nature Communications, 2023, 14: 4102. 

Qu Y, Zhou P, Tong C, Bi C*, Xu L*. Assembly and analysis of the Populus deltoides mitochondrial genome: the first report of a multi-circular mitochondrial conformation for the genus Populus. Journal of Forestry Research, 2023, 34: 717–733. 

Wang Y, Sun N, Shi W, Ma Q, Sun L, Hao M, Bi C*, Li S*. Assembly and comparative analysis of the complete mitochondrial genome of Ilex macrocarpa. Forests, 2023, 14: 2372. 

Han F, Qu Y, Chen Y, Xu L, Bi C*. Assembly and comparative analysis of the complete mitochondrial genome of Salix wilsonii using PacBio HiFi sequencing. Frontiers in Plant Science, 2022, 13: 1031769. （ESI热点论文）

Ma Q, Wang Y, Li S, Wen J, Zhu L, Yan K, Du Y, Ren J, Li S, Chen Z, Bi C*, Li Q*. Assembly and comparative analysis of the first complete mitochondrial genome of Acer truncatum Bunge: a woody oil-tree species producing nervonic acid. BMC Plant Biology, 2022, 22: 29. （ESI高被引论文）

其他论文

Yu Wan, Qian Wei, Hao Sun, Bi C, et al., Machine learning assisted biomimetic flexible SERS sensor from seashells for pesticide classification and concentration prediction. Chemical Engineering Journal, 2025, 507: 160813.

Sun H ,Xiong S ,Shi B , Bi C, et al., Flexible Surface-Enhanced Raman Scattering (SERS) sensor for residue-free pesticide detection based on agriculture 4.0 concepts.Colloids and Surfaces A: Physicochemical and Engineering Aspects, 2024, 700134647-134647.

Shi B ,Chen B ,Yan X , Bi C, et al., One-pot synthesis of stable and fast Bi2O2S/Bi2O3 heterojunction self-powered photoelectrochemical sensors for sensitive detection of tetracycline. Materials & Design, 2024, 239112781.

Liu W , Shi B, Li Z, Bi C, et al., High performance surface plasmon enhanced ZnO-Pt @ AlN core shell UV photodetector synthesized by magnetron sputtering. Materials & Design, 2024, 237112542.

 Huang Z, Xu L, Cai C, Zhou Y, Liu J, Xu Z, Zhu Z, Kang W, Cen W, Pei S, Chen D, Shi C, Wu X, Huang Y, Xu C, Yan Y, Yang Y, Xue T, He W, Hu X, Zhang Y, Chen Y, Bi C, He C, Xue L, Xiao S, Yue Z, Jiang Y, Yu JK, Jarvis ED, Li G, Lin G, Zhang Q*, Zhou Q*. Three amphioxus reference genomes reveal gene and chromosome evolution of chordates. Proc Natl Acad Sci U S A. 2023 Mar 7;120(10):e2201504120.  

Liu W ,Yin F ,Hangkai Q , Bi C, et al. Determinants and performance prediction on photocatalytic properties of hydroxyapatite by machine learning. Optical Materials, 2023, 146.

Lu N, Qiao Y, An P, Luo J, Bi C, Li M, Lu Z*, Tu J*. Exploration of whole genome amplification generated chimeric sequences in long-read sequencing data. Brief Bioinform. 2023 Sep 20;24(5):bbad275. 

Xu Y, Bi C, Wu G, Wei S, Dai X, Yin T, Ye N*. VGSC: A Web-Based Vector Graph Toolkit of Genome Synteny and Collinearity. Biomed Res Int. 2016;2016:7823429. 

Lu N, Li J, Bi C, Guo J, Tao Y, Luan K, Tu J*, Lu Z*. ChimeraMiner: An Improved Chimeric Read Detection Pipeline and Its Application in Single Cell Sequencing. Int J Mol Sci. 2019 Apr 21;20(8):1953.  

Wang X, Cheng F, Rohlsen D, Bi C, Wang C, Xu Y, Wei S, Ye Q, Yin T, Ye N*. Organellar genome assembly methods and comparative analysis of horticultural plants. Hortic Res. 2018 Jan 10;5:3.  

He C, Han T, Liao X, Zhou Y, Wang X, Guan R, Tian T, Li Y, Bi C, Lu N, He Z, Hu B, Zhou Q, Hu Y, Lu Z*, Chen JY*. Phagocytic intracellular digestion in amphioxus (Branchiostoma). Proc Biol Sci. 2018 Jun 13;285(1880):20180438.  

Ye N*, Wang X, Li J, Bi C, Xu Y, Wu D, Ye Q. Assembly and comparative analysis of complete mitochondrial genome sequence of an economic plant Salix suchowensis. PeerJ. 2017 Mar 29;5:e3148.  

......

1. 江苏省自然科学基金，青年项目，2022-07至2025-06，在研，主持

2. 江苏省高校自然科学基金，面上项目，2022-07至2024-06，已结题，主持

3. 江苏省“双创博士”，2022-07至2024-06，主持

现代人工智能、Python程序语言、林业遥感信息处理、生物信息学